First Funding Period, January 2018–July 2021
Research Clusters, Projects, and Members of FOR 2685
Cluster A: Preservation of Mineralized Tissues
- A1 Experimental alteration of bones and teeth: Quantification of effects on inorganic and organic compounds — Principal Investigators Prof. Dr. Thorsten Geisler and Prof. Dr. Thomas Tütken, Ph.D. student Anna Kral
- A2 Organic phase (extracellular matrix, osteocyte, blood vessel) preservation in dinosaur bone: Chemical composition and hypotheses — Principal Investigators Prof. Dr. P. Martin Sander and Prof. Dr. Christa Müller, Ph.D. students Kayleigh Weyand and Mariam Tahoun
- A3 The organic phase in dinosaur eggshell: Analysis, models of preservation, and implications for the evolution of bird reproduction — Principal Investigators PD Dr. Marianne Engeser and Prof. Dr. P. Martin Sander, Ph.D. student Anne Schnell, postdoctoral researcher Dr. Tzu-Ruei Yang
Cluster B: Permineralization of Non-mineralized Tissues
- B1 Physicochemical and microbial processes governing the decay of organic substance in sediment under anoxic conditions — Principal Investigator Prof. Dr. Chris Ballhaus, postdoctoral researcher Dr. Fabian Gäb
- B2 From cell to cell, tissue to tissue: Pathways in low-temperature wood silicification — Principal Investigators PD Dr. Carole T. Gee and Prof. Dr. Chris Ballhaus, postdoctoral researchers Dr. Moritz Liesegang/Dr. Shook Ling Low
- B3 The impact of bacterial activity on decay and fossilization of arthropods: An experimental approach — Principal Investigators Prof. Dr. Gabriele Bierbaum and Prof. Dr. Jes Rust, Ph.D. students Kathrin Janssen and Bastian Mähler
- B4 U–Pb systematics of fossilized biogenic tissues as a tracer of long-term diagenetic processes — Principal Investigator Prof. Dr. Thorsten Geisler, postdoc researcher Dr. Frank Tomaschek
Cluster C: Alteration of Non-mineralized Tissues and Compounds
- C1 The detection of antiherbivore secondary compounds in the fossil record and their potential role in defense against insects — Principal Investigators Prof. Dr. Torsten Wappler and Prof. Dr. Jes Rust, postdoc researcher Dr. Victoria McCoy/Ph.D. student Madieh Malekhosseini
- C2 Soft tissue preservation in amber: A comparative study on the taphonomy and limits of fossilization of resin embedded arthropods — Principal Investigator Prof. Dr. Jes Rust, Ph.D. student Jonas Barthel
More information on the First Funding Period is available here: http://FOR2685.geisler-wierwille.eu
Youtube: Analytical and Imaging Instruments for Understanding Fossilization
Second Funding Period, July 2021–July 2024
Research Clusters, Projects, and Members of FOR 2685
Cluster A: Preservation of Mineralized Tissues
- A4 Fossilization of bone studied in-operando by fluid-cell Raman spectroscopy — Principal Investigator Prof. Dr. Thorsten Geisler, postdoctoral researcher Dr. Anna Kral/ postdoctoral researcher Dr. Frank Tomaschek
- A5 Organic phase (extracellular matrix, osteocyte, blood vessel, Sharpey’s fiber) in dinosaur bone: Chemical composition and hypotheses of preservation — Principal Investigators Prof. Dr. Martin Sander/Prof. Dr. Thomas Tütken and Prof. Dr. Christa Müller, Ph.D. students Mariam Tahoun and Kayleigh Weyand
- A6 Chemical and mineralogical changes of calcareous shell material during fossilisation processes – an experimental approach —Principal Investigators Prof. Dr. Thomas Tütken and Prof. Dr. Bernd Schöne, Ph.D. student Laura Fink/Ph.D. student Daniel Vigelius
Cluster B: Permineralization of Non-mineralized Tissues
- B5 Experimental studies on the genesis of phosphatized fish fossils in calcareous concretions — Principal Investigator and postdoctoral researcher Dr. Fabian Gäb/Prof. Dr. Thorsten Geisler
Cluster C: Alteration of Non-mineralized Tissues and Compounds
- C3 Destruction, decay, and preservation: Early fossilization of leaf compressions — Principal Investigators PD Dr. Carole Gee and Prof. Dr. Gabriele Bierbaum, postdoctoral researcher Dr. Brianne Palmer
- C4 The role of microbes and biofilms in leaf fossilization — Principal Investigators Prof. Dr. Gabriele Bierbaum and PD Dr. Carole Gee, postdoctoral researcher Dr. Sabina Karačić
- C5 Soft tissue preservation in amber II – a multi-methodical approach towards the understanding of amber taphonomy — Principal Investigator Prof. Dr. Jes Rust, postdoctoral researcher Dr. Bastian Mähler
- C6 Searching for biological pigments and structural color in fossil plants — Principal Investigators PD Dr. Carole Gee and Prof. Dr. Christa Müller; postdoctoral researcher Dr. Klaus Wolkenstein
Cluster M: Methods and Archives
- M1 MALDI imaging and analysis of fossils — Principal Investigator PD Dr. Marianne Engeser, Ph.D. student Marius Herbst
International Workshop on Fossilization
University of Bonn, June 14–17, 2024
The International Workshop on Fossilization sponsored by DFG Research Unit FOR 2685 was held at the University of Bonn from June 14 to 17, 2024. Specialists on the fossilization of plants and animals, as well as on cutting-edge methods applied to elucidate fossilization, were featured in a series of 20 talks over the long weekend. Experts came from all corners of the globe, but the meeting also showcased the work of early-career scientists.
At the end of the workshop, two round-table discussions were held. The topic of the first session was Microbes, biofilms, and fossilization, led by Brianne Palmer, while the second session on Fossilization of dinosaur hard and soft tissues was moderated by Phillip Manning.
Below is a list of topics, speakers, and titles of the exciting talks on fossilization. All talk abstracts were published in the journal Terra Nostra, and the open-access abstract volume is available online here.
Welcome to Bonn
- DFG FOR 2685 Speaker Carole Gee
Fossil lagerstätten [Moderator: Thomas Tütken]
- Derek E. G. Briggs: Exceptional fossils—The marine record
- Andrew C. Rozefelds: Sub-basaltic silcrete permineralisation of Eocene-Miocene forest floor in eastern Australia
- Carole T. Gee and Victoria E. McCoy: Exceptional plant fossilization in the middle Eocene lignites of the Geiseltal fossil lagerstätte, Germany
- John R. Foster: Carbonaceous preservation of vertebrate, invertebrate, and plant soft tissue in a single fossil deposit in the Late Jurassic Morrison Formation, USA
Methods development and application [Moderator: Marianne Engeser]
- Phillip L. Manning and Victoria M. Egerton: Impossible fossils
- ReBecca Hunt-Foster, Alan Titus, David Polly, and Celina Suarez: Geochemical fingerprinting using portable X-ray fluorescence and rare earth elements of Late Jurassic fossils from the Colorado Plateau, USA
- Marius Herbst and Marianne Engeser: MALDI imaging—A possible application for fossils?
- H. James Cleaves II, Grethe Hystad, Anirudh Prabhu, Michael L. Wong, George D. Cody, Sophia Economon, and Robert M. Hazen: A robust, agnostic molecular biosignature based on machine learning
Experimental taphonomy [Moderator: Derek E. G. Briggs]
- Thomas Tütken, Michael Weber, Katrin Weber, Anna Kral, Sven Brömme, Hubert Vonhof, Tina Lüdecke, Alfredo Martinez-Garcia, Thorsten Geisler, and Michael Wiedenbeck:
In vitro alteration experiments on teeth: Effects on in vivo isotope compositions - Mariah M. Howell, Carole T. Gee, and Karl-Heinz Südekum: Experimental production of herbivore coprolites: What’s left after digestion?
Preservation & fossilization through microbial mediation [Moderator: Gabriele Bierbaum]
- Karim Benzerara, Fériel Skouri-Panet, Elodie Duprat, Emmanuel Letavernier, and Julie Cosmidis: The induction of phosphogenesis by bacteria—Who and how?
- Fabian M. Gäb, Sabina Karačić, Richard Wirth, Gabriele Bierbaum, and Christoph Bultmann: Enzymatically induced apatite formation as a key mechanism in fish fossilization: An experimental study
- Miguel Iniesto: Experimental taphonomy with cyanobacterial mats: Unveiling the role of these communities in fossilization
- Brianne Palmer, Sabina Karačić, Gabriele Bierbaum, and Carole T. Gee: Microbial biofilms and sediment interactions: Key factors in the early stages of leaf decay and preservation
- Sabina Karačić, Brianne Palmer, Jesenko Karačić, Esther Sib, Fabian Gäb, Carole T. Gee, and Gabriele Bierbaum: Experimental biofilm-mediated mineralization of leaves
- Qiang Li, Jun Liu, Fabian Gäb, and P. Martin Sander: Fossilization and low-grade metamorphism of Triassic marine reptiles from southwest China: A continuum of apatite transformation and fluorite precipitation
Amber chemistry and fossil plant pigments [Moderator: Christa Müller]
- Connor M. McDermott, Parker L. Flanders, and Elizabeth A. Ambrose: Paleopharmaceuticals—Analysis and identification of abietane-type diterpenoids in Baltic amber samples as potential drug scaffolds
- Tzu-Ruei Yang, Yun-Ru Chen, Yao-Chang Lee, Chun-Chieh Wang, and Liang-Jian Shiau: A chemicotaxonomical survey of Southeast Asian fossil resins and its taphonomical implications for their fossilization processes
- Victoria M. Egerton, Phillip L. Manning, and Roy Wogelius: Synchrotron-based analysis of fossil plant pigments
- Klaus Wolkenstein, Christa E. Müller, Marianne Engeser, and Carole T. Gee: Detection and quantification of biological pigments in fossil leaves by targeted mass spectrometry
Closing remarks
- DFG FOR 2685 Speaker: Carole T. Gee
Student theses on fossilization
- Yang, T.-R. 2018. The reproductive biology of Cretaceous oviraptorid dinosaurs and its implication for the origin of bird reproduction. Ph.D. dissertation in Biology, Institute of Geosciences, Division of Paleontology, University of Bonn [Project A3]
- Scheil, M. 2018. U-Pb systematics of fossil biogenic apatite from the Morrison Formation (USA) and the Langenberg Quarry (Germany). M.Sc. thesis in Geosciences, Institute of Geosciences, Division of Paleontology, University of Bonn [Project B4]
- Krick, A. 2018. Petrographische und geochemische Untersuchungen von verkieseltem Holz aus dem Escalante Petrified Forest State Park in Utah (USA). B.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B4]
- Egger, F. 2018. Petrographische und geochemische Untersuchungen fossiler Knochen aus Tendaguru (Tansania) B.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B4]
- Gäb, F. 2019. Experimental data from siderite formation in Superior type BIFs on the CO2 partial pressure in the Archaean atmosphere. Ph.D. dissertation in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B1]
- Gerschermann, S. 2019. Untersuchungen von Mikrostrukturen und Viskositäten zur Klärung der Ablagerungen und der Fossilisation in den Solnhofener Plattenkalken. B.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B1]
- Henkemeier, N. 2019. Redescription of the soft part preservation in the holotype of Scaphognathus crassirostris (Goldfuß, 1831). M.Sc. thesis in Geosciences, Institute of Geosciences, Division of Paleontology, University of Bonn [Project A2]
- Raubach, D. 2019. Petrologische und geochemische Analyse von Fossilien aus der Posidonienschiefer-Formation Lias ε aus Süddeutschland. B.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B4]
- Niedermeier, D. 2020. Uranium-lead dating of carnelian from paleosols of the Buntsandstein. M.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B4]
- Sartorelli de Olivera, H. 2020. An enhanced thaphonomic model for Brazlian Mesosauridae (Amniota, Sauropsida) using a quantitative approach. M.Sc. thesis in Organismic Biology, Evolutionary Biology, Palaeobiology, University of Bonn [Project A2]
- Pereira, L. G. 2020. Mineralogy and preservational quality of Late Mesozoic silicified wood and mineralized dinosaur bone. M.Sc. thesis in Organismic Biology, Evolutionary Biology, Palaeobiology, University of Bonn [Project B2]
- Graeber, F. 2021. Geochemical analysis of fossilized bone tissue. M.Sc. thesis in Geosciences, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project B4]
- Schnell, A. 2021. Mass spectrometric analysis of short-lived intermediates and ancient fossils. Ph.D dissertation in Chemistry, Kekulé Institute of Organic Chemistry and Biochemistry, University of Bonn [Project A3]
- Herbst, M. 2021. Establishing MALDI imaging on a variety of samples. M. Sc. thesis in Chemistry, Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn [Project M1]
- Barthel, H. J. 2022. Soft tissue preservation in amber — A study on the limits of fossilisation in amber-embedded arthropods. Ph.D. dissertation in Geosciences, Institute of Geosciences, Division of Paleontology, University of Bonn [Project C2]
- Janssen, K. 2022. Der Einfluss bakterieller Aktivität auf die Präservierung und den Abbau von Weichgewebe. Ph.D. dissertation in Biology, Institute of Medical Microbiology, Immunology and Parasitology, University of Bonn [Project B3]
- Mähler, B. 2022. Decay experiments on decapods under different environmental conditions and the influence of bacterial activity with regard to fossilization. Ph.D. dissertation in Geosciences, Institute of Geosciences, Division of Paleontology, University of Bonn [Project B3]
- Kral, A. G. 2022. In vitro aqueous alteration experiments on cortical bone – quantification and visualization of effects from the micro – down to the nanoscale. Ph.D. dissertation in Geoscience, Institute of Geosciences, Division of Geochemistry and Petrology, University of Bonn [Project A1]
- Hemmerle, M. 2022. Die Extraktion von Kollagen aus Knochen. B.Sc. thesis in Chemistry, Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn [Project M1]
- Mayrhofer, A. 2022. Quantitative Analyse von Protoporphyrin IX und Biliverdin mittels LC-MS. B.Sc. thesis in Chemistry, Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn [Project A3]
- Reinecke, C. 2022. Quantitative Bestimmung von Farbpigmenten aus modernen und fossilen Eierschalen mittels LC-MS. B.Sc. thesis in Chemistry, Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn [Project A3]
- Malekhosseini, M. 2023. Fossil record and new aspects of calcium biomineraliyation and plant waxes in fossil leaves. Ph.D. dissertation in Geosciences, Institute of Geosciences, Division of Paleontology, University of Bonn [Project C1]
- Tahoun, M. 2023. Development and optimization of analytical methods for identifying and quantifying organic compounds in biological and paleontological specimens. Ph.D. dissertation in Pharmacy, Department of Pharmaceutical & Medicinal Chemistry, University of Bonn [Project A2]
- Kilic, N. 2024. Temporal dynamics of microbial biofilm formation on Ginkgo foliage—Insights into the leaf decay process. M.Sc. thesis in Organismic Biology, Evolutionary Biology, Palaeobiology, University of Bonn [Project C3]
Publications of Research Unit FOR 2685, from 2018 to 2024
https://doi.org/10.1016/j.isci.2020.100913
https://doi.org/10.1016/j.cretres.2019.104264
https://doi.org/10.1016/j.sedgeo.2020.105603
https://doi.org/10.1039/d0ra10688g
https://doi.org/10.1111/brv.12806
https://doi.org/10.3390/biology11050670
https://doi.org/10.1038/s41598-023-28713-x
https://doi.org/10.37520/fi.2022.019